DM42_3242 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

DM42_3242

annotation not available (123 aa)

Predicted Functional Partners:

DM42_3243

0.951

DM42_3237

0.885

DM42_3239

0.847

arnA_2

0.831

DM42_3241

0.795

arnC

0.690

DM42_4123

0.685

DM42_3244

0.588

DM42_2631

0.556

DM42_2435

0.502

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_2435	DM42_2631	DM42_2435	DM42_2631	annotation not available	Translocation and assembly module tamb; Uncharacterized protein	0.714
DM42_2435	DM42_3237	DM42_2435	DM42_3237	annotation not available	annotation not available	0.523
DM42_2435	DM42_3242	DM42_2435	DM42_3242	annotation not available	annotation not available	0.502
DM42_2435	DM42_3243	DM42_2435	DM42_3243	annotation not available	annotation not available	0.412
DM42_2435	DM42_4123	DM42_2435	DM42_4123	annotation not available	Hypothetical protein; Uncharacterized protein	0.776
DM42_2631	DM42_2435	DM42_2631	DM42_2435	Translocation and assembly module tamb; Uncharacterized protein	annotation not available	0.714
DM42_2631	DM42_3237	DM42_2631	DM42_3237	Translocation and assembly module tamb; Uncharacterized protein	annotation not available	0.465
DM42_2631	DM42_3242	DM42_2631	DM42_3242	Translocation and assembly module tamb; Uncharacterized protein	annotation not available	0.556
DM42_2631	DM42_4123	DM42_2631	DM42_4123	Translocation and assembly module tamb; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.740
DM42_3237	DM42_2435	DM42_3237	DM42_2435	annotation not available	annotation not available	0.523
DM42_3237	DM42_2631	DM42_3237	DM42_2631	annotation not available	Translocation and assembly module tamb; Uncharacterized protein	0.465
DM42_3237	DM42_3239	DM42_3237	DM42_3239	annotation not available	annotation not available	0.975
DM42_3237	DM42_3241	DM42_3237	DM42_3241	annotation not available	UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase; Belongs to the DegT/DnrJ/EryC1 family	0.956
DM42_3237	DM42_3242	DM42_3237	DM42_3242	annotation not available	annotation not available	0.885
DM42_3237	DM42_3243	DM42_3237	DM42_3243	annotation not available	annotation not available	0.952
DM42_3237	DM42_3244	DM42_3237	DM42_3244	annotation not available	Hypothetical protein; Uncharacterized protein	0.495
DM42_3237	DM42_4123	DM42_3237	DM42_4123	annotation not available	Hypothetical protein; Uncharacterized protein	0.699
DM42_3237	arnA_2	DM42_3237	DM42_3238	annotation not available	annotation not available	0.985
DM42_3237	arnC	DM42_3237	DM42_3240	annotation not available	annotation not available	0.995
DM42_3239	DM42_3237	DM42_3239	DM42_3237	annotation not available	annotation not available	0.975

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