STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_3259annotation not available (352 aa)    
Predicted Functional Partners:
acoC
annotation not available
 
 
 0.948
acoA
ABC transporter substrate-binding protein; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha
 
   
 0.917
DM42_4762
Alkaline phosphatase family protein; Belongs to the alkaline phosphatase family
   
 
  0.904
DM42_520
Uncharacterized protein; Alkaline phosphatase
     
  0.900
acpA
acid_phos_Burk: acid phosphatase, Burkholderia-type family protein
     
  0.900
acoB
Pyruvate dehydrogenase; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta
 
 
 
 0.889
nadE
Nad+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
  
  
 0.724
DM42_3260
Meso-butanediol dehydrogenase / (s,s)-butanediol dehydrogenase / diacetyl reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family
 
   
 0.711
ribD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate
  
  
 0.685
putA
Rhh-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source
     
 0.632
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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