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rpmE protein (Burkholderia cepacia) - STRING interaction network
"rpmE" - L31: ribosomal protein L31 in Burkholderia cepacia
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmEL31- ribosomal protein L31 (86 aa)    
Predicted Functional Partners:
rpmB
L28- ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family (77 aa)
 
 
  0.997
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA (90 aa)
   
 
  0.994
rpmI
rpmI_bact- ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family (65 aa)
   
 
  0.994
rpsP
S16- ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family (84 aa)
   
 
  0.994
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (103 aa)
   
 
  0.991
rpsI
annotation not available (130 aa)
   
 
  0.990
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (130 aa)
   
 
  0.990
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (142 aa)
   
 
  0.989
rpmA
L27- ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family (87 aa)
   
 
  0.988
rplQ
L17- ribosomal protein L17 (131 aa)
   
 
  0.988
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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