STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_3270annotation not available (166 aa)    
Predicted Functional Partners:
DM42_3269
annotation not available
 
   
 0.888
DM42_3268
Glucose-regulated metallo-peptidase m90 family protein; Belongs to the MtfA family
       0.721
DM42_4661
annotation not available
  
     0.615
cueR
Merr family transcriptional regulator, copper efflux regulator; cueR: Cu(I)-responsive transcriptional regulator
  
     0.595
rho
Transcription termination factor rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template
     
 0.559
merR
Merr family transcriptional regulator, mercuric resistance operon regulatory protein; merR: Hg(II)-responsive transcriptional regulator
  
   
 0.557
DM42_6833
annotation not available
  
     0.552
DM42_4609
annotation not available
  
     0.530
DM42_2624
annotation not available
      
 0.522
yphA_2
annotation not available
      
 0.522
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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