rlmN protein (Burkholderia cepacia) - STRING interaction network

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Score

rlmN

Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs (379 aa)

Predicted Functional Partners:

ndk

0.796

WI67_04765

0.748

engA

0.744

WL94_27805

0.742

DM42_3287

0.741

WL94_21845

0.662

ispG

0.655

pnp

0.629

rsmH

0.629

rlmH

0.627

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_3287	engA	DM42_3287	DM42_3292	annotation not available	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis	0.522
DM42_3287	ispG	DM42_3287	DM42_3288	annotation not available	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate; Belongs to the IspG family	0.810
DM42_3287	ndk	DM42_3287	DM42_3285	annotation not available	Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate	0.615
DM42_3287	rlmN	DM42_3287	DM42_3286	annotation not available	Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs	0.741
WI67_04765	WL94_21845	DM42_841	DM42_1108	Oxygen-independent coproporphyrinogen-III oxidase-like protein; Involved in the biosynthesis of porphyrin-containing compound	Pyridoxal phosphate homeostasis protein; Pyridoxal 5’-phosphate (PLP)-binding protein, which is involved in PLP homeostasis	0.543
WI67_04765	engA	DM42_841	DM42_3292	Oxygen-independent coproporphyrinogen-III oxidase-like protein; Involved in the biosynthesis of porphyrin-containing compound	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis	0.426
WI67_04765	pnp	DM42_841	DM42_2808	Oxygen-independent coproporphyrinogen-III oxidase-like protein; Involved in the biosynthesis of porphyrin-containing compound	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction	0.761
WI67_04765	rlmN	DM42_841	DM42_3286	Oxygen-independent coproporphyrinogen-III oxidase-like protein; Involved in the biosynthesis of porphyrin-containing compound	Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs	0.748
WI67_04765	rsmH	DM42_841	DM42_1288	Oxygen-independent coproporphyrinogen-III oxidase-like protein; Involved in the biosynthesis of porphyrin-containing compound	Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA	0.407
WL94_21845	WI67_04765	DM42_1108	DM42_841	Pyridoxal phosphate homeostasis protein; Pyridoxal 5’-phosphate (PLP)-binding protein, which is involved in PLP homeostasis	Oxygen-independent coproporphyrinogen-III oxidase-like protein; Involved in the biosynthesis of porphyrin-containing compound	0.543
WL94_21845	pnp	DM42_1108	DM42_2808	Pyridoxal phosphate homeostasis protein; Pyridoxal 5’-phosphate (PLP)-binding protein, which is involved in PLP homeostasis	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction	0.539
WL94_21845	rlmN	DM42_1108	DM42_3286	Pyridoxal phosphate homeostasis protein; Pyridoxal 5’-phosphate (PLP)-binding protein, which is involved in PLP homeostasis	Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs	0.662
WL94_27805	engA	DM42_202	DM42_3292	annotation not available	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis	0.763
WL94_27805	rlmN	DM42_202	DM42_3286	annotation not available	Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs	0.742
WL94_27805	rsmH	DM42_202	DM42_1288	annotation not available	Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA	0.513
engA	DM42_3287	DM42_3292	DM42_3287	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis	annotation not available	0.522
engA	WI67_04765	DM42_3292	DM42_841	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis	Oxygen-independent coproporphyrinogen-III oxidase-like protein; Involved in the biosynthesis of porphyrin-containing compound	0.426
engA	WL94_27805	DM42_3292	DM42_202	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis	annotation not available	0.763
engA	ispG	DM42_3292	DM42_3288	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate; Belongs to the IspG family	0.584
engA	ndk	DM42_3292	DM42_3285	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis	Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate	0.469

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