Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DM42_3184 | DM42_3297 | DM42_3184 | DM42_3297 | annotation not available | Uncharacterized protein; DUF2065 domain-containing protein | 0.818 |
| DM42_3184 | Hfq | DM42_3184 | DM42_3293 | annotation not available | Host factor-i protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs | 0.521 |
| DM42_3184 | hflC | DM42_3184 | DM42_3296 | annotation not available | annotation not available | 0.592 |
| DM42_3184 | hflK | DM42_3184 | DM42_3295 | annotation not available | Modulator of ftsh protease hflk; HflC and HflK could encode or regulate a protease | 0.592 |
| DM42_3184 | hflX | DM42_3184 | DM42_3294 | annotation not available | Gtp-binding protein hflx; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis | 0.857 |
| DM42_3184 | miaA | DM42_3184 | DM42_1073 | annotation not available | Trna dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) | 0.831 |
| DM42_3297 | DM42_3184 | DM42_3297 | DM42_3184 | Uncharacterized protein; DUF2065 domain-containing protein | annotation not available | 0.818 |
| DM42_3297 | Hfq | DM42_3297 | DM42_3293 | Uncharacterized protein; DUF2065 domain-containing protein | Host factor-i protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs | 0.602 |
| DM42_3297 | hflC | DM42_3297 | DM42_3296 | Uncharacterized protein; DUF2065 domain-containing protein | annotation not available | 0.822 |
| DM42_3297 | hflK | DM42_3297 | DM42_3295 | Uncharacterized protein; DUF2065 domain-containing protein | Modulator of ftsh protease hflk; HflC and HflK could encode or regulate a protease | 0.803 |
| DM42_3297 | hflX | DM42_3297 | DM42_3294 | Uncharacterized protein; DUF2065 domain-containing protein | Gtp-binding protein hflx; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis | 0.721 |
| Hfq | DM42_3184 | DM42_3293 | DM42_3184 | Host factor-i protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs | annotation not available | 0.521 |
| Hfq | DM42_3297 | DM42_3293 | DM42_3297 | Host factor-i protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs | Uncharacterized protein; DUF2065 domain-containing protein | 0.602 |
| Hfq | engA | DM42_3293 | DM42_3292 | Host factor-i protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs | Ribosome-associated gtpase enga; GTPase that plays an essential role in the late steps of ribosome biogenesis | 0.723 |
| Hfq | hflC | DM42_3293 | DM42_3296 | Host factor-i protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs | annotation not available | 0.768 |
| Hfq | hflK | DM42_3293 | DM42_3295 | Host factor-i protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs | Modulator of ftsh protease hflk; HflC and HflK could encode or regulate a protease | 0.784 |
| Hfq | hflX | DM42_3293 | DM42_3294 | Host factor-i protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs | Gtp-binding protein hflx; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis | 0.984 |
| Hfq | miaA | DM42_3293 | DM42_1073 | Host factor-i protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs | Trna dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) | 0.885 |
| Hfq | rlmN | DM42_3293 | DM42_3286 | Host factor-i protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs | 23S rRNA (adenine2503-C2)-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity | 0.572 |
| ahpC_3 | hflX | DM42_1017 | DM42_3294 | Thioredoxin-dependent peroxiredoxin; Peroxidase; C-terminal domain of 1-Cys peroxiredoxin family protein | Gtp-binding protein hflx; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis | 0.770 |
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