kup protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

kup

Probable potassium transport system protein kup; Transport of potassium into the cell (638 aa)

Predicted Functional Partners:

WL94_14115

0.609

kdpA

0.544

WI67_12390

0.504

uppP

0.441

WL94_24355

0.435

WI67_09595

0.427

WL94_31925

0.416

WL94_12330

0.415

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WI67_09595	WL94_31925	DM42_3300	DM42_3299	annotation not available	Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family	0.835
WI67_09595	kup	DM42_3300	DM42_3301	annotation not available	Probable potassium transport system protein kup; Transport of potassium into the cell	0.427
WI67_12390	WL94_24355	DM42_2778	DM42_2777	annotation not available	annotation not available	0.999
WI67_12390	kdpA	DM42_2778	DM42_2774	annotation not available	Potassium-transporting ATPase potassium-binding subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane	0.947
WI67_12390	kup	DM42_2778	DM42_3301	annotation not available	Probable potassium transport system protein kup; Transport of potassium into the cell	0.504
WL94_12330	WL94_14115	DM42_3728	DM42_2285	annotation not available	annotation not available	0.679
WL94_12330	kup	DM42_3728	DM42_3301	annotation not available	Probable potassium transport system protein kup; Transport of potassium into the cell	0.415
WL94_14115	WL94_12330	DM42_2285	DM42_3728	annotation not available	annotation not available	0.679
WL94_14115	kup	DM42_2285	DM42_3301	annotation not available	Probable potassium transport system protein kup; Transport of potassium into the cell	0.609
WL94_24355	WI67_12390	DM42_2777	DM42_2778	annotation not available	annotation not available	0.999
WL94_24355	kdpA	DM42_2777	DM42_2774	annotation not available	Potassium-transporting ATPase potassium-binding subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane	0.975
WL94_24355	kup	DM42_2777	DM42_3301	annotation not available	Probable potassium transport system protein kup; Transport of potassium into the cell	0.435
WL94_31925	WI67_09595	DM42_3299	DM42_3300	Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family	annotation not available	0.835
WL94_31925	kup	DM42_3299	DM42_3301	Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family	Probable potassium transport system protein kup; Transport of potassium into the cell	0.416
kdpA	WI67_12390	DM42_2774	DM42_2778	Potassium-transporting ATPase potassium-binding subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane	annotation not available	0.947
kdpA	WL94_24355	DM42_2774	DM42_2777	Potassium-transporting ATPase potassium-binding subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane	annotation not available	0.975
kdpA	kup	DM42_2774	DM42_3301	Potassium-transporting ATPase potassium-binding subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane	Probable potassium transport system protein kup; Transport of potassium into the cell	0.544
kup	WI67_09595	DM42_3301	DM42_3300	Probable potassium transport system protein kup; Transport of potassium into the cell	annotation not available	0.427
kup	WI67_12390	DM42_3301	DM42_2778	Probable potassium transport system protein kup; Transport of potassium into the cell	annotation not available	0.504
kup	WL94_12330	DM42_3301	DM42_3728	Probable potassium transport system protein kup; Transport of potassium into the cell	annotation not available	0.415

page 1 of 2

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2019

Credits

Access

Info

About