STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgeFMulti-copper polyphenol oxidoreductase laccase family protein; Belongs to the multicopper oxidase YfiH/RL5 family (279 aa)    
Predicted Functional Partners:
DM42_3309
23S rRNA pseudouridine1911/1915/1917 synthase; Belongs to the pseudouridine synthase RluA family
 
 
 0.962
ftsZ
Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
 
  
 0.766
yfiO
Outer membrane assembly lipoyfio family protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
       0.711
DM42_1108
Plp dependent protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
 
  
 0.638
amt
Amt: ammonium transporter family protein
    
 0.614
DM42_3184
annotation not available
     
 0.569
phbC
annotation not available
       0.542
preA
Dihydropyrimidine dehydrogenase (nad+) subunit prea; pyrD_sub1_fam: dihydroorotate dehydrogenase family domain protein
  
   0.517
DM42_893
annotation not available
  
  
 0.477
rimO
Ribosomal protein s12 methylthiotransferase rimo; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12
 
    0.458
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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