DM42_3365 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DM42_3365

annotation not available (517 aa)

Predicted Functional Partners:

DM42_3367

0.972

DM42_3366

0.970

DM42_3364

0.951

DM42_3363

0.919

DM42_3369

0.911

DM42_3371

0.904

DM42_3377

0.854

DM42_3388

0.810

DM42_3381

0.777

DM42_3359

0.766

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
DM42_3359	DM42_3365	annotation not available	annotation not available	0.766
DM42_3359	DM42_3366	annotation not available	Uncharacterized protein; Conserved hypothetical protein	0.789
DM42_3359	DM42_3367	annotation not available	phageSPP1_gp7: phage head morphogenesis , SPP1 gp7 family domain protein	0.822
DM42_3359	DM42_3369	annotation not available	Uncharacterized protein; Conserved hypothetical protein	0.758
DM42_3359	DM42_3371	annotation not available	Conserved hypothetical protein	0.767
DM42_3359	DM42_3377	annotation not available	Conserved hypothetical protein	0.751
DM42_3359	DM42_3381	annotation not available	annotation not available	0.735
DM42_3359	DM42_3388	annotation not available	annotation not available	0.757
DM42_3363	DM42_3364	annotation not available	Hypothetical protein; Uncharacterized protein	0.959
DM42_3363	DM42_3365	annotation not available	annotation not available	0.919
DM42_3363	DM42_3366	annotation not available	Uncharacterized protein; Conserved hypothetical protein	0.813
DM42_3363	DM42_3367	annotation not available	phageSPP1_gp7: phage head morphogenesis , SPP1 gp7 family domain protein	0.806
DM42_3363	DM42_3369	annotation not available	Uncharacterized protein; Conserved hypothetical protein	0.577
DM42_3363	DM42_3371	annotation not available	Conserved hypothetical protein	0.464
DM42_3364	DM42_3363	Hypothetical protein; Uncharacterized protein	annotation not available	0.959
DM42_3364	DM42_3365	Hypothetical protein; Uncharacterized protein	annotation not available	0.951
DM42_3364	DM42_3366	Hypothetical protein; Uncharacterized protein	Uncharacterized protein; Conserved hypothetical protein	0.871
DM42_3364	DM42_3367	Hypothetical protein; Uncharacterized protein	phageSPP1_gp7: phage head morphogenesis , SPP1 gp7 family domain protein	0.867
DM42_3364	DM42_3369	Hypothetical protein; Uncharacterized protein	Uncharacterized protein; Conserved hypothetical protein	0.646
DM42_3364	DM42_3371	Hypothetical protein; Uncharacterized protein	Conserved hypothetical protein	0.590

page 1 of 5

Server load: low (6%) [HD]

Permalink

Network

Neighborhood

Textmining

Fusion

Experiments

Cooccurrence

Databases

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About