STRINGSTRING
DM42_339 protein (Burkholderia cepacia) - STRING interaction network
"DM42_339" - annotation not available in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_339annotation not available (327 aa)    
Predicted Functional Partners:
WL94_12850
sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein (169 aa)
 
  0.989
WI67_08135
sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein (222 aa)
 
 
  0.849
WL94_12840
tonB-siderophor- TonB-dependent siderophore receptor family protein (839 aa)
 
   
  0.807
fptA
annotation not available (726 aa)
 
   
  0.703
DM42_5621
annotation not available (777 aa)
   
 
  0.619
DM42_2693
sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein (184 aa)
 
 
  0.598
DM42_5771
annotation not available (503 aa)
 
   
  0.596
WL94_12910
tonB-siderophor- TonB-dependent siderophore receptor family protein (696 aa)
 
   
  0.563
fcuA
annotation not available (726 aa)
 
   
  0.543
WL94_25860
annotation not available (363 aa)
   
   
  0.538
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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