Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DM42_166 | DM42_3415 | DM42_166 | DM42_3415 | Hypothetical protein; Uncharacterized protein | annotation not available | 0.447 |
DM42_166 | DM42_847 | DM42_166 | DM42_847 | Hypothetical protein; Uncharacterized protein | Conserved hypothetical protein | 0.601 |
DM42_3415 | DM42_166 | DM42_3415 | DM42_166 | annotation not available | Hypothetical protein; Uncharacterized protein | 0.447 |
DM42_3415 | DM42_3416 | DM42_3415 | DM42_3416 | annotation not available | annotation not available | 0.598 |
DM42_3415 | DM42_847 | DM42_3415 | DM42_847 | annotation not available | Conserved hypothetical protein | 0.498 |
DM42_3415 | HflB | DM42_3415 | DM42_4849 | annotation not available | ftsH_fam: ATP-dependent metallopeptidase HflB family protein | 0.424 |
DM42_3415 | eno | DM42_3415 | DM42_2981 | annotation not available | Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis | 0.523 |
DM42_3415 | fetB | DM42_3415 | DM42_3414 | annotation not available | Putative abc transport system permease protein; ABC transporter permease | 0.979 |
DM42_3415 | ftsY | DM42_3415 | DM42_2260 | annotation not available | Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components | 0.528 |
DM42_3415 | ksgA | DM42_3415 | DM42_2364 | annotation not available | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits | 0.552 |
DM42_3415 | pyrG | DM42_3415 | DM42_2979 | annotation not available | Ctp synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates | 0.491 |
DM42_3415 | rpsK | DM42_3415 | DM42_1449 | annotation not available | Small subunit ribosomal protein s11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome | 0.521 |
DM42_3416 | DM42_3415 | DM42_3416 | DM42_3415 | annotation not available | annotation not available | 0.598 |
DM42_3416 | fetB | DM42_3416 | DM42_3414 | annotation not available | Putative abc transport system permease protein; ABC transporter permease | 0.598 |
DM42_847 | DM42_166 | DM42_847 | DM42_166 | Conserved hypothetical protein | Hypothetical protein; Uncharacterized protein | 0.601 |
DM42_847 | DM42_3415 | DM42_847 | DM42_3415 | Conserved hypothetical protein | annotation not available | 0.498 |
HflB | DM42_3415 | DM42_4849 | DM42_3415 | ftsH_fam: ATP-dependent metallopeptidase HflB family protein | annotation not available | 0.424 |
HflB | eno | DM42_4849 | DM42_2981 | ftsH_fam: ATP-dependent metallopeptidase HflB family protein | Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis | 0.605 |
HflB | ftsY | DM42_4849 | DM42_2260 | ftsH_fam: ATP-dependent metallopeptidase HflB family protein | Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components | 0.627 |
HflB | rpsK | DM42_4849 | DM42_1449 | ftsH_fam: ATP-dependent metallopeptidase HflB family protein | Small subunit ribosomal protein s11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome | 0.629 |
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