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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_342annotation not available (409 aa)    
Predicted Functional Partners:
DM42_5945
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family
 
  
 0.731
pgaA
PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
  
    0.700
epaO
spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family
 
  
 0.699
virB11
virB11: P-type DNA transfer ATPase VirB11
     
 0.656
DM42_4816
annotation not available
     
 0.655
DM42_4819
annotation not available
     
 0.652
WL94_13220
annotation not available
 
  
 0.619
DM42_1169
Autotrans_barl: outer membrane autotransporter barrel domain protein
 
  
 0.606
DM42_7039
Conserved hypothetical protein
  
     0.598
VL15_00700
annotation not available
  
     0.594
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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