WI67_09250 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

WI67_09250

annotation not available (297 aa)

Predicted Functional Partners:

WL94_29840

0.707

WL94_19510

0.682

DM42_3932

0.605

DM42_6647

0.586

WI67_06080

0.566

DM42_3978

0.547

DM42_5231

0.517

DM42_3456

0.498

WI67_03945

0.496

WL94_35735

0.487

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

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TSV: tab separated values - can be opened in Excel

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_3456	WI67_09250	DM42_3456	DM42_3455	annotation not available	annotation not available	0.498
DM42_3932	DM42_3978	DM42_3932	DM42_3978	annotation not available	annotation not available	0.467
DM42_3932	WI67_09250	DM42_3932	DM42_3455	annotation not available	annotation not available	0.605
DM42_3932	WL94_35735	DM42_3932	DM42_5659	annotation not available	annotation not available	0.450
DM42_3978	DM42_3932	DM42_3978	DM42_3932	annotation not available	annotation not available	0.467
DM42_3978	WI67_09250	DM42_3978	DM42_3455	annotation not available	annotation not available	0.547
DM42_3978	WL94_19510	DM42_3978	DM42_6782	annotation not available	annotation not available	0.535
DM42_5231	WI67_09250	DM42_5231	DM42_3455	annotation not available	annotation not available	0.517
DM42_6647	WI67_09250	DM42_6647	DM42_3455	annotation not available	annotation not available	0.586
WI67_03945	WI67_09250	DM42_1003	DM42_3455	annotation not available	annotation not available	0.496
WI67_03945	WL94_19510	DM42_1003	DM42_6782	annotation not available	annotation not available	0.419
WI67_06080	WI67_09250	DM42_469	DM42_3455	annotation not available	annotation not available	0.566
WI67_09250	DM42_3456	DM42_3455	DM42_3456	annotation not available	annotation not available	0.498
WI67_09250	DM42_3932	DM42_3455	DM42_3932	annotation not available	annotation not available	0.605
WI67_09250	DM42_3978	DM42_3455	DM42_3978	annotation not available	annotation not available	0.547
WI67_09250	DM42_5231	DM42_3455	DM42_5231	annotation not available	annotation not available	0.517
WI67_09250	DM42_6647	DM42_3455	DM42_6647	annotation not available	annotation not available	0.586
WI67_09250	WI67_03945	DM42_3455	DM42_1003	annotation not available	annotation not available	0.496
WI67_09250	WI67_06080	DM42_3455	DM42_469	annotation not available	annotation not available	0.566
WI67_09250	WL94_19510	DM42_3455	DM42_6782	annotation not available	annotation not available	0.682

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