STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_3460annotation not available (347 aa)    
Predicted Functional Partners:
DM42_3456
annotation not available
 
  
 0.868
DM42_3457
annotation not available
 
  
 0.843
rhmT_17
annotation not available
 
 
 0.791
DM42_3461
Hypothetical protein; Uncharacterized protein
 
     0.736
ghrB
Glyoxylate/hydroxypyruvate/2-ketogluconate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
 
  
 0.703
DM42_3462
Hypothetical protein; Uncharacterized protein
 
     0.684
DM42_4323
annotation not available
  
     0.659
DM42_7030
Deor family transcriptional regulator, aga operon transcriptional repressor; deoR C terminal sensor domain protein
  
 
 
 0.501
DM42_899
Hypothetical protein; DeoR family transcriptional regulator; deoR C terminal sensor domain protein
  
 
 
 0.488
deoR
annotation not available
  
 
 
 0.469
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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