Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WI67_09215

Uncharacterized protein (120 aa)

Predicted Functional Partners:

WI67_09220

0.918

WI67_07945

0.784

WL94_17225

0.784

WI67_30645

0.784

WI67_31660

0.784

WL94_01100

0.784

DM42_3631

0.784

WL94_30050

0.784

WL94_31165

0.784

WI67_10370

0.784

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but resolution at 400 dpi

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_3631	WI67_07945	DM42_3631	DM42_98	Conserved hypothetical protein	Uncharacterized protein	0.783
DM42_3631	WI67_09215	DM42_3631	DM42_3462	Conserved hypothetical protein	Uncharacterized protein	0.784
DM42_3631	WI67_09220	DM42_3631	DM42_3461	Conserved hypothetical protein	Uncharacterized protein	0.568
DM42_3631	WI67_10370	DM42_3631	DM42_3145	Conserved hypothetical protein	Uncharacterized protein	0.782
DM42_3631	WI67_30645	DM42_3631	DM42_5470	Conserved hypothetical protein	Uncharacterized protein	0.784
DM42_3631	WI67_31660	DM42_3631	DM42_5275	Conserved hypothetical protein	Uncharacterized protein	0.781
DM42_3631	WL94_01100	DM42_3631	DM42_5139	Conserved hypothetical protein	Serine/threonine protein kinase	0.783
DM42_3631	WL94_17225	DM42_3631	DM42_561	Conserved hypothetical protein	Uncharacterized protein	0.782
DM42_3631	WL94_30050	DM42_3631	DM42_3412	Conserved hypothetical protein	annotation not available	0.784
DM42_3631	WL94_31165	DM42_3631	DM42_3147	Conserved hypothetical protein	annotation not available	0.784
WI67_07945	DM42_3631	DM42_98	DM42_3631	Uncharacterized protein	Conserved hypothetical protein	0.783
WI67_07945	WI67_09215	DM42_98	DM42_3462	Uncharacterized protein	Uncharacterized protein	0.784
WI67_07945	WI67_09220	DM42_98	DM42_3461	Uncharacterized protein	Uncharacterized protein	0.527
WI67_07945	WI67_10370	DM42_98	DM42_3145	Uncharacterized protein	Uncharacterized protein	0.784
WI67_07945	WI67_30645	DM42_98	DM42_5470	Uncharacterized protein	Uncharacterized protein	0.784
WI67_07945	WI67_31660	DM42_98	DM42_5275	Uncharacterized protein	Uncharacterized protein	0.784
WI67_07945	WL94_01100	DM42_98	DM42_5139	Uncharacterized protein	Serine/threonine protein kinase	0.784
WI67_07945	WL94_17225	DM42_98	DM42_561	Uncharacterized protein	Uncharacterized protein	0.784
WI67_07945	WL94_30050	DM42_98	DM42_3412	Uncharacterized protein	annotation not available	0.784
WI67_07945	WL94_31165	DM42_98	DM42_3147	Uncharacterized protein	annotation not available	0.784

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Network

Neighborhood

Experiments

Cooccurrence

Databases

Fusion

Textmining

Coexpression

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