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DM42_347 protein (Burkholderia cepacia) - STRING interaction network
"DM42_347" - vgr_GE: Rhs element Vgr family protein in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_347vgr_GE- Rhs element Vgr family protein (930 aa)    
Predicted Functional Partners:
DM42_343
Conserved hypothetical protein (707 aa)
 
          0.909
DM42_1364
VI_effect_Hcp1- type VI secretion system effector, Hcp1 family protein (167 aa)
 
     
  0.862
WI67_02145
annotation not available (161 aa)
 
   
  0.861
WI67_02115
Type VI secretion protein (448 aa)
 
   
  0.860
WI67_02180
annotation not available (1314 aa)
 
   
  0.850
WI67_02165
Type VI secretion protein ImpA; impA-related N-terminal family protein (373 aa)
 
     
  0.845
DM42_346
Conserved hypothetical protein (296 aa)
              0.845
DM42_345
Conserved hypothetical protein (124 aa)
              0.845
DM42_344
Conserved hypothetical protein (159 aa)
              0.845
WL94_16170
Type VI secretion protein (366 aa)
 
   
  0.842
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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