WI67_24695 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WI67_24695

annotation not available (342 aa)

Predicted Functional Partners:

acoD

0.945

WL94_20520

0.900

WI67_30435

0.696

DM42_6772

0.695

WL94_32365

0.695

WL94_33650

0.692

WL94_39135

0.692

pyk

0.615

dhaT

0.521

WL94_39200

0.521

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_6772	WI67_24695	DM42_6772	DM42_3516	annotation not available	annotation not available	0.695
DM42_6772	WL94_20520	DM42_6772	DM42_859	annotation not available	annotation not available	0.900
WI67_24695	DM42_6772	DM42_3516	DM42_6772	annotation not available	annotation not available	0.695
WI67_24695	WI67_30435	DM42_3516	DM42_5513	annotation not available	annotation not available	0.696
WI67_24695	WL94_20520	DM42_3516	DM42_859	annotation not available	annotation not available	0.900
WI67_24695	WL94_32365	DM42_3516	DM42_2657	annotation not available	annotation not available	0.695
WI67_24695	WL94_33650	DM42_3516	DM42_6612	annotation not available	annotation not available	0.692
WI67_24695	WL94_39135	DM42_3516	DM42_5890	annotation not available	annotation not available	0.692
WI67_24695	WL94_39200	DM42_3516	DM42_5877	annotation not available	annotation not available	0.521
WI67_24695	acoD	DM42_3516	DM42_1643	annotation not available	annotation not available	0.945
WI67_24695	dhaT	DM42_3516	DM42_6646	annotation not available	annotation not available	0.521
WI67_24695	pyk	DM42_3516	DM42_2442	annotation not available	Pyruv_kin- pyruvate kinase; Belongs to the pyruvate kinase family	0.615
WI67_30435	WI67_24695	DM42_5513	DM42_3516	annotation not available	annotation not available	0.696
WI67_30435	WL94_20520	DM42_5513	DM42_859	annotation not available	annotation not available	0.900
WL94_20520	DM42_6772	DM42_859	DM42_6772	annotation not available	annotation not available	0.900
WL94_20520	WI67_24695	DM42_859	DM42_3516	annotation not available	annotation not available	0.900
WL94_20520	WI67_30435	DM42_859	DM42_5513	annotation not available	annotation not available	0.900
WL94_20520	WL94_32365	DM42_859	DM42_2657	annotation not available	annotation not available	0.900
WL94_20520	WL94_33650	DM42_859	DM42_6612	annotation not available	annotation not available	0.900
WL94_20520	WL94_39135	DM42_859	DM42_5890	annotation not available	annotation not available	0.900

page 1 of 2

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2019

Credits

Access

Info

About