STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_352Conserved hypothetical protein (185 aa)    
Predicted Functional Partners:
DM42_351
Conserved hypothetical protein
 
     0.967
DM42_350
Type vi secretion system secreted protein vgrg; vgr_GE: Rhs element Vgr family protein
 
     0.908
DM42_354
vgr_GE: Rhs element Vgr family protein
 
     0.877
DM42_347
Type vi secretion system secreted protein vgrg; vgr_GE: Rhs element Vgr family protein
 
     0.810
DM42_356
Conserved hypothetical protein
  
     0.781
DM42_343
Conserved hypothetical protein
 
     0.769
DM42_6380
annotation not available
  
     0.763
DM42_4761
Conserved hypothetical protein
  
     0.756
DM42_5101
Conserved hypothetical protein
 
     0.752
DM42_3772
annotation not available
  
     0.723
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.