STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_354vgr_GE: Rhs element Vgr family protein (931 aa)    
Predicted Functional Partners:
DM42_351
Conserved hypothetical protein
 
     0.890
DM42_352
Conserved hypothetical protein
 
     0.877
DM42_353
Conserved hypothetical protein
       0.859
WI67_02145
annotation not available
 
  
 0.852
WI67_02115
Type VI secretion protein
 
  
 0.852
DM42_1364
VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein
 
   
 0.850
WI67_02180
annotation not available
 
  
 0.844
WI67_02165
Type VI secretion protein ImpA; impA-related N-terminal family protein
 
   
 0.840
WL94_16170
Type VI secretion protein
 
  
 0.837
WL94_16125
IV_VI_DotU: type IV/VI secretion system , DotU family domain protein
 
  
 0.829
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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