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DM42_3540 protein (Burkholderia cepacia) - STRING interaction network
"DM42_3540" - annotation not available in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_3540annotation not available (148 aa)    
Predicted Functional Partners:
DM42_3541
annotation not available (270 aa)
 
          0.781
DM42_3539
Conserved hypothetical protein (192 aa)
              0.700
WL94_26995
annotation not available (422 aa)
 
          0.589
WI67_31370
Polyketide cyclase (161 aa)
          0.525
WL94_27010
annotation not available (117 aa)
 
        0.496
WI67_21255
annotation not available (139 aa)
        0.462
DM42_6669
annotation not available (84 aa)
   
          0.449
DM42_5234
sigX4- RNA polymerase sigma-70 factor, TIGR02957 family protein (294 aa)
   
          0.428
DM42_5634
annotation not available (143 aa)
        0.416
DM42_389
annotation not available (186 aa)
   
        0.403
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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