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STRINGSTRING
DM42_355 protein (Burkholderia cepacia) - STRING interaction network
"DM42_355" - annotation not available in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_355annotation not available (87 aa)    
Predicted Functional Partners:
DM42_356
Conserved hypothetical protein (465 aa)
 
   
  0.893
DM42_350
vgr_GE- Rhs element Vgr family protein (1244 aa)
 
   
  0.815
DM42_347
vgr_GE- Rhs element Vgr family protein (930 aa)
 
   
  0.814
DM42_354
vgr_GE- Rhs element Vgr family protein (931 aa)
 
   
  0.809
WI67_02180
annotation not available (1314 aa)
 
   
  0.803
DM42_5104
vgr_GE- Rhs element Vgr family protein (834 aa)
 
   
  0.800
WI67_02175
Type VI secretion protein (329 aa)
 
   
  0.799
DM42_2884
vgr_GE- Rhs element Vgr family protein (902 aa)
 
   
  0.794
WL94_16125
IV_VI_DotU- type IV/VI secretion system , DotU family domain protein (260 aa)
 
   
  0.787
WI67_02115
Type VI secretion protein (448 aa)
 
   
  0.785
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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