STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_3555annotation not available (485 aa)    
Predicted Functional Partners:
DM42_3556
annotation not available
 
 
 0.944
DM42_3559
annotation not available
 
     0.786
DM42_6627
Conserved hypothetical protein
  
     0.711
DM42_4148
annotation not available
  
 
 
 0.704
DM42_3759
annotation not available
  
     0.698
DM42_6817
annotation not available
  
     0.693
DM42_6262
Hypothetical protein; Uncharacterized protein
  
     0.672
DM42_4922
annotation not available
  
     0.664
DM42_3427
Conserved hypothetical protein
  
     0.657
DM42_5932
annotation not available
  
 
 
 0.644
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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