STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_3616annotation not available (472 aa)    
Predicted Functional Partners:
DM42_3615
annotation not available
 
     0.806
nirM
annotation not available
      
 0.633
DM42_5686
annotation not available
   
 
 0.627
AcpA
acid_phos_Burk: acid phosphatase, Burkholderia-type family protein
 
     0.547
soxC
annotation not available
     
 0.512
DM42_3731
annotation not available
      
 0.496
DM42_3251
annotation not available
      
 0.489
nirB
Nitrite reductase [nad(p)h], large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
      
 0.489
acpA
acid_phos_Burk: acid phosphatase, Burkholderia-type family protein
 
     0.472
aauA
Aralkylamine dehydrogenase light chain; Belongs to the aromatic amine dehydrogenase light chain family
   
 
 0.439
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.