Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

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Textmining

[Homology]

Score

WL94_11735

annotation not available (268 aa)

Predicted Functional Partners:

WL94_11740

0.887

WI67_24015

0.784

DM42_233

0.529

WL94_11745

0.457

DM42_6948

0.453

DM42_356

0.444

fabF

0.441

DM42_1051

0.412

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

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... as a high-resolution bitmap:

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same PNG format, but resolution at 400 dpi

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_1051	WL94_11735	DM42_1051	DM42_3624	annotation not available	annotation not available	0.412
DM42_233	DM42_6948	DM42_233	DM42_6948	annotation not available	Beta-ketoacyl synthase, C-terminal domain protein	0.603
DM42_233	WL94_11735	DM42_233	DM42_3624	annotation not available	annotation not available	0.529
DM42_233	fabF	DM42_233	DM42_701	annotation not available	3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP	0.560
DM42_356	WL94_11735	DM42_356	DM42_3624	Conserved hypothetical protein	annotation not available	0.444
DM42_6948	DM42_233	DM42_6948	DM42_233	Beta-ketoacyl synthase, C-terminal domain protein	annotation not available	0.603
DM42_6948	WL94_11735	DM42_6948	DM42_3624	Beta-ketoacyl synthase, C-terminal domain protein	annotation not available	0.453
DM42_6948	fabF	DM42_6948	DM42_701	Beta-ketoacyl synthase, C-terminal domain protein	3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP	0.842
WI67_24015	WL94_11735	DM42_3623	DM42_3624	annotation not available	annotation not available	0.784
WI67_24015	WL94_11740	DM42_3623	DM42_3625	annotation not available	3-keto-5-aminohexanoate cleavage protein	0.662
WL94_11735	DM42_1051	DM42_3624	DM42_1051	annotation not available	annotation not available	0.412
WL94_11735	DM42_233	DM42_3624	DM42_233	annotation not available	annotation not available	0.529
WL94_11735	DM42_356	DM42_3624	DM42_356	annotation not available	Conserved hypothetical protein	0.444
WL94_11735	DM42_6948	DM42_3624	DM42_6948	annotation not available	Beta-ketoacyl synthase, C-terminal domain protein	0.453
WL94_11735	WI67_24015	DM42_3624	DM42_3623	annotation not available	annotation not available	0.784
WL94_11735	WL94_11740	DM42_3624	DM42_3625	annotation not available	3-keto-5-aminohexanoate cleavage protein	0.887
WL94_11735	WL94_11745	DM42_3624	DM42_3626	annotation not available	annotation not available	0.457
WL94_11735	fabF	DM42_3624	DM42_701	annotation not available	3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP	0.441
WL94_11740	WI67_24015	DM42_3625	DM42_3623	3-keto-5-aminohexanoate cleavage protein	annotation not available	0.662
WL94_11740	WL94_11735	DM42_3625	DM42_3624	3-keto-5-aminohexanoate cleavage protein	annotation not available	0.887

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