STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_3633annotation not available (727 aa)    
Predicted Functional Partners:
yiaV_1
Efflux transporter, rnd family, mfp subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
 
 0.857
DM42_253
Hypothetical protein; DUF1656 domain-containing protein
 
   
 0.811
DM42_7418
Efflux transporter, rnd family, mfp subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
 
 0.706
DM42_3632
Bacterial regulatory helix-turn-helix , lysr family protein; Belongs to the LysR transcriptional regulatory family
 
     0.640
DM42_999
annotation not available
  
   0.599
DM42_251
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein
 
  
 0.597
DM42_3634
Hypothetical protein; Uncharacterized protein
       0.525
soxR
Merr family transcriptional regulator, redox-sensitive transcriptional activator soxr; soxR: redox-sensitive transcriptional activator SoxR
   
  
 0.508
DM42_2699
Conserved hypothetical protein
  
     0.496
fusA
Translation elongation factor g; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
      
 0.495
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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