STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_3681annotation not available (337 aa)    
Predicted Functional Partners:
lsdA
Levansucrase; Belongs to the glycosyl hydrolase 68 family
 
   
 0.646
DM42_7030
Deor family transcriptional regulator, aga operon transcriptional repressor; deoR C terminal sensor domain protein
  
 
 
 0.589
DM42_3683
Fructan beta-fructosidase; Glycosyl hydrolases family 32 N-terminal domain protein
 
   
 0.572
DM42_899
Hypothetical protein; DeoR family transcriptional regulator; deoR C terminal sensor domain protein
  
 
 
 0.565
DM42_5507
Deor family transcriptional regulator, glycerol-3-phosphate regulon repressor; AraC family transcriptional regulator; deoR C terminal sensor domain protein
  
 
 
 0.520
DM42_4739
annotation not available
  
 
 
 0.513
deoR
annotation not available
  
 
 
 0.492
glpR_3
annotation not available
  
 
 
 0.460
DM42_1419
annotation not available
    
 
 0.455
DM42_6031
annotation not available
 
 
 
 0.450
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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