STRINGSTRING
lsdA protein (Burkholderia cepacia) - STRING interaction network
"lsdA" - annotation not available in Burkholderia cepacia
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lsdAannotation not available (520 aa)    
Predicted Functional Partners:
WL94_12490
Glycosyl hydrolase family 3 C-terminal domain protein (733 aa)
         
  0.909
WL94_32345
Glycosyl hydrolase family 3 C-terminal domain protein (748 aa)
         
  0.909
WL94_12700
annotation not available (806 aa)
     
 
  0.908
DM42_3683
Glycosyl hydrolases family 32 N-terminal domain protein (545 aa)
 
     
  0.897
nagE
PTS N-acetyl-D-glucosamine transporter; PTS-II-BC-nag- PTS system, N-acetylglucosamine-specific IIBC component (588 aa)
         
  0.784
WL94_13925
PTS glucose transporter subunit IIA; PTS_I_fam- phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family (860 aa)
         
  0.712
WI67_23715
annotation not available (337 aa)
 
     
  0.640
secA
Protein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family (933 aa)
         
  0.616
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP (539 aa)
         
  0.572
DM42_2875
ac_CoA_lig_AcsA- acetate--CoA ligase (597 aa)
           
  0.489
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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