STRINGSTRING
tfdF protein (Burkholderia cepacia) - STRING interaction network
"tfdF" - annotation not available in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tfdFannotation not available (355 aa)    
Predicted Functional Partners:
chqB
annotation not available (293 aa)
     
  0.978
DM42_368
annotation not available (100 aa)
 
          0.885
WL94_12945
annotation not available (355 aa)
 
   
  0.737
WL94_37415
Catechol_proteo- catechol 1,2-dioxygenase (313 aa)
     
  0.731
WL94_12940
annotation not available (552 aa)
 
     
  0.730
WL94_27205
Catechol_proteo- catechol 1,2-dioxygenase (300 aa)
     
  0.716
DM42_6497
MMSDH- methylmalonate-semialdehyde dehydrogenase (506 aa)
   
   
  0.629
WL94_38080
MMSDH- methylmalonate-semialdehyde dehydrogenase (497 aa)
 
   
  0.629
WL94_09155
MMSDH- methylmalonate-semialdehyde dehydrogenase (508 aa)
 
   
  0.629
WL94_11850
MMSDH- methylmalonate-semialdehyde dehydrogenase (505 aa)
   
   
  0.629
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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