STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_3701annotation not available (393 aa)    
Predicted Functional Partners:
WL94_12170
annotation not available
 
     0.914
WL94_12175
annotation not available
 
     0.856
WL94_12180
annotation not available
 
     0.844
WL94_12190
ssuA_fam: ABC transporter, substrate-binding , aliphatic sulfonates family protein
 
     0.794
WL94_10910
Uncharacterized protein
  
     0.685
DM42_444
annotation not available
  
     0.677
WI67_23615
annotation not available
 
     0.639
WI67_23610
Uncharacterized protein; Class II Aldolase and Adducin N-terminal domain protein
       0.612
DM42_5417
annotation not available
  
     0.612
WL94_12155
acyl-CoA dehydrogenase, N-terminal domain protein
 
     0.577
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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