STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_3713Hypothetical protein; Preprotein translocase subunit SecD (83 aa)    
Predicted Functional Partners:
DM42_3712
annotation not available
  
    0.754
DM42_3714
annotation not available
 
     0.705
DM42_5812
annotation not available
  
     0.523
DM42_472
annotation not available
  
     0.489
DM42_1645
annotation not available
  
    0.469
DM42_3884
ABC transporter; msbA_lipidA: lipid A export permease/ATP-binding protein MsbA
  
     0.468
DM42_6365
annotation not available
  
     0.455
DM42_49
annotation not available
  
     0.444
DM42_6621
annotation not available
  
     0.443
DM42_2672
annotation not available
   
    0.410
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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