STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybaLKetopantoate reductase pane/apba family protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family (571 aa)    
Predicted Functional Partners:
nhaA
Na+/h+ antiporter nhaa; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons
     
 0.792
DM42_7237
Conserved hypothetical protein
    
 0.776
DM42_2285
Monovalent cation:h+ antiporter-2, cpa2 family; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
 
   
0.684
DM42_4891
annotation not available
       0.536
recQ
recQ: ATP-dependent DNA helicase RecQ
  
    0.496
secF
Preprotein translocase subunit secf; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
       0.491
DM42_3730
annotation not available
  
  
 0.482
GshA
gshA_ferroox: glutamate--cysteine ligase
 
     0.475
DM42_3731
annotation not available
       0.471
mgtA
ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
       0.468
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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