WL94_12395 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WL94_12395

acyl-CoA dehydrogenase, C-terminal domain protein (398 aa)

Predicted Functional Partners:

WL94_12400

0.972

DM42_3740

0.970

WI67_23345

0.969

DM42_3744

0.968

WI67_04470

0.925

bkdB

0.915

WL94_00340

0.906

WL94_21365

0.900

DM42_2069

0.829

WL94_33095

0.824

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_2069	WI67_04470	DM42_2069	DM42_900	acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.952
DM42_2069	WL94_00340	DM42_2069	DM42_5283	acyl-CoA dehydrogenase, N-terminal domain protein	cit_synth_II- 2-methylcitrate synthase/citrate synthase II family protein; Belongs to the citrate synthase family	0.909
DM42_2069	WL94_12395	DM42_2069	DM42_3741	acyl-CoA dehydrogenase, N-terminal domain protein	acyl-CoA dehydrogenase, C-terminal domain protein	0.829
DM42_2069	WL94_21365	DM42_2069	DM42_1016	acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.923
DM42_2069	WL94_33095	DM42_2069	DM42_6699	acyl-CoA dehydrogenase, N-terminal domain protein	acyl-CoA dehydrogenase, C-terminal domain protein	0.841
DM42_2069	bkdB	DM42_2069	DM42_477	acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.918
DM42_3740	DM42_3744	DM42_3740	DM42_3744	annotation not available	annotation not available	0.971
DM42_3740	WI67_23345	DM42_3740	DM42_3743	annotation not available	Uncharacterized protein	0.969
DM42_3740	WL94_12395	DM42_3740	DM42_3741	annotation not available	acyl-CoA dehydrogenase, C-terminal domain protein	0.970
DM42_3740	WL94_12400	DM42_3740	DM42_3742	annotation not available	annotation not available	0.982
DM42_3744	DM42_3740	DM42_3744	DM42_3740	annotation not available	annotation not available	0.971
DM42_3744	WI67_23345	DM42_3744	DM42_3743	annotation not available	Uncharacterized protein	0.969
DM42_3744	WL94_12395	DM42_3744	DM42_3741	annotation not available	acyl-CoA dehydrogenase, C-terminal domain protein	0.968
DM42_3744	WL94_12400	DM42_3744	DM42_3742	annotation not available	annotation not available	0.969
WI67_04470	DM42_2069	DM42_900	DM42_2069	annotation not available	acyl-CoA dehydrogenase, N-terminal domain protein	0.952
WI67_04470	WL94_00340	DM42_900	DM42_5283	annotation not available	cit_synth_II- 2-methylcitrate synthase/citrate synthase II family protein; Belongs to the citrate synthase family	0.906
WI67_04470	WL94_12395	DM42_900	DM42_3741	annotation not available	acyl-CoA dehydrogenase, C-terminal domain protein	0.925
WI67_04470	WL94_21365	DM42_900	DM42_1016	annotation not available	annotation not available	0.455
WI67_04470	WL94_33095	DM42_900	DM42_6699	annotation not available	acyl-CoA dehydrogenase, C-terminal domain protein	0.940
WI67_04470	bkdB	DM42_900	DM42_477	annotation not available	annotation not available	0.913

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2019

Credits

Access

Info

About