• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
WL94_12425 protein (Burkholderia cepacia) - STRING interaction network
"WL94_12425" - LPS biosynthesis protein in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WL94_12425LPS biosynthesis protein; GMP_PMI- mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family (506 aa)    
Predicted Functional Partners:
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose (348 aa)
 
  0.993
WI67_04295
annotation not available (464 aa)
  0.978
pgi
annotation not available (540 aa)
       
  0.946
fbp
annotation not available (337 aa)
       
  0.936
DM42_4847
annotation not available (311 aa)
         
    0.900
DM42_3746
annotation not available (192 aa)
         
  0.850
WL94_26945
Eps_fam- capsular exopolysaccharide family domain protein (741 aa)
   
 
  0.842
DM42_3756
annotation not available (771 aa)
   
 
  0.842
DM42_1061
annotation not available (983 aa)
   
   
  0.804
WL94_01635
Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source (609 aa)
   
 
  0.720
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
Server load: low (11%) [HD]