STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_375annotation not available (326 aa)    
Predicted Functional Partners:
DM42_5040
annotation not available
 
    0.684
DM42_376
Hypothetical protein; acyl-CoA dehydrogenase, C-terminal domain protein
 
   
 0.626
DM42_5037
acyl-CoA dehydrogenase, N-terminal domain protein
 
  
 0.610
DM42_2833
annotation not available
  
 0.557
DM42_6334
annotation not available
  
 0.541
DM42_2903
annotation not available
 
      0.499
DM42_377
Hypothetical protein; Class II Aldolase and Adducin N-terminal domain protein
 
    0.476
DM42_1047
annotation not available
    
0.459
DM42_5039
annotation not available
 
 0.447
DM42_6713
annotation not available
    
 0.447
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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