STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_3757annotation not available (372 aa)    
Predicted Functional Partners:
DM42_3756
annotation not available
 
 
 0.993
DM42_4227
Eps_fam: capsular exopolysaccharide family domain protein
 
 
 0.993
ptp
Low molecular weight protein-tyrosine-phosphatase ptp; Belongs to the low molecular weight phosphotyrosine protein phosphatase family
 
  
 0.842
DM42_1065
annotation not available
  
  
 
0.825
DM42_4228
annotation not available
  
  
 
0.824
DM42_2977
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2
     
 0.794
lptD
Organic solvent tolerance family protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
    
 0.589
DM42_2633
annotation not available
  
 
  0.581
ompA_2
annotation not available
   
 
  0.572
DM42_1061
annotation not available
  
  
 0.535
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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