WL94_12500 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

WL94_12500

annotation not available (285 aa)

Predicted Functional Partners:

DM42_3762

0.581

DM42_3761

0.581

WL94_02880

0.552

DM42_4495

0.535

DM42_481

0.531

DM42_3137

0.531

WL94_32030

0.483

DM42_6608

0.478

DM42_3932

0.466

WL94_12510

0.465

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

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TSV: tab separated values - can be opened in Excel

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_3137	DM42_3932	DM42_3137	DM42_3932	annotation not available	annotation not available	0.405
DM42_3137	DM42_4495	DM42_3137	DM42_4495	annotation not available	annotation not available	0.501
DM42_3137	DM42_481	DM42_3137	DM42_481	annotation not available	annotation not available	0.404
DM42_3137	DM42_6608	DM42_3137	DM42_6608	annotation not available	annotation not available	0.595
DM42_3137	WL94_12500	DM42_3137	DM42_3763	annotation not available	annotation not available	0.531
DM42_3761	DM42_3762	DM42_3761	DM42_3762	annotation not available	Conserved hypothetical protein	0.845
DM42_3761	WL94_12500	DM42_3761	DM42_3763	annotation not available	annotation not available	0.581
DM42_3762	DM42_3761	DM42_3762	DM42_3761	Conserved hypothetical protein	annotation not available	0.845
DM42_3762	WL94_12500	DM42_3762	DM42_3763	Conserved hypothetical protein	annotation not available	0.581
DM42_3932	DM42_3137	DM42_3932	DM42_3137	annotation not available	annotation not available	0.405
DM42_3932	DM42_4495	DM42_3932	DM42_4495	annotation not available	annotation not available	0.610
DM42_3932	DM42_481	DM42_3932	DM42_481	annotation not available	annotation not available	0.496
DM42_3932	WL94_12500	DM42_3932	DM42_3763	annotation not available	annotation not available	0.466
DM42_4495	DM42_3137	DM42_4495	DM42_3137	annotation not available	annotation not available	0.501
DM42_4495	DM42_3932	DM42_4495	DM42_3932	annotation not available	annotation not available	0.610
DM42_4495	WL94_12500	DM42_4495	DM42_3763	annotation not available	annotation not available	0.535
DM42_481	DM42_3137	DM42_481	DM42_3137	annotation not available	annotation not available	0.404
DM42_481	DM42_3932	DM42_481	DM42_3932	annotation not available	annotation not available	0.496
DM42_481	WL94_12500	DM42_481	DM42_3763	annotation not available	annotation not available	0.531
DM42_6608	DM42_3137	DM42_6608	DM42_3137	annotation not available	annotation not available	0.595

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