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DM42_3785 protein (Burkholderia cepacia) - STRING interaction network
"DM42_3785" - type_I_sec_PrtD: type I secretion system ATPase family protein in Burkholderia cepacia
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_3785type_I_sec_PrtD- type I secretion system ATPase family protein (598 aa)    
Predicted Functional Partners:
DM42_3784
type_I_hlyD- type I secretion membrane fusion , HlyD family protein (455 aa)
   
  0.977
DM42_3786
type_I_sec_TolC- type I secretion outer membrane , TolC family protein (484 aa)
 
   
  0.922
DM42_5856
type_I_hlyD- type I secretion membrane fusion , HlyD family protein (390 aa)
   
  0.541
DM42_5853
T1SS_VCA0849- type I secretion C-terminal target domain protein (2134 aa)
   
   
  0.515
DM42_4628
annotation not available (384 aa)
   
          0.460
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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