STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gtdAGentisate_1_2: gentisate 1,2-dioxygenase (347 aa)    
Predicted Functional Partners:
maiA
maiA: maleylacetoacetate isomerase
  
 
 0.936
mhbM
annotation not available
 
   
 0.911
DM42_3822
Bacterial regulatory helix-turn-helix , lysr family protein; Belongs to the LysR transcriptional regulatory family
 
  
 0.846
MaiA
maiA: maleylacetoacetate isomerase
 
  
 0.795
DM42_3820
annotation not available
 
  
 0.736
DM42_3817
annotation not available
 
   
 0.616
DM42_3487
annotation not available
 
   
 0.548
catA
Catechol_proteo: catechol 1,2-dioxygenase
      
 0.541
CatA
Catechol_proteo: catechol 1,2-dioxygenase
      
 0.541
DM42_4512
annotation not available
       0.491
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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