STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_3825annotation not available (375 aa)    
Predicted Functional Partners:
DM42_3826
4-hydroxyproline epimerase; Belongs to the proline racemase family
 
 
 0.997
dapA_1
1-pyrroline-4-hydroxy-2-carboxylate deaminase; Belongs to the DapA family
 
 
  0.986
DM42_3823
annotation not available
 
 0.985
DM42_3824
annotation not available
 
 
 0.979
DM42_6651
annotation not available
 
  
  0.934
DM42_6870
annotation not available
 
  
 0.684
DM42_5469
annotation not available
 
     0.669
DM42_6650
annotation not available
 
 
 0.617
DM42_3601
Putative proline racemase; Belongs to the proline racemase family
 
   
 0.581
dgdA
2,2-dialkylglycine decarboxylase (pyruvate); The dialkylglycine decarboxylase is of interest because it normally catalyzes both decarboxylation and amino transfer. It may be more properly described as a decarboxylating aminotransferase rather than an aminotransferring decarboxylase
  
  
 0.573
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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