WL94_09205 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

WL94_09205

annotation not available (292 aa)

Predicted Functional Partners:

WL94_09200

0.741

WI67_21455

0.639

dgdR

0.637

WL94_05690

0.604

WL94_38520

0.604

DM42_6674

0.602

WL94_04240

0.600

WI67_06180

0.594

DM42_6291

0.588

WI67_06080

0.585

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_6291	DM42_6674	DM42_6291	DM42_6674	annotation not available	annotation not available	0.458
DM42_6291	WI67_21455	DM42_6291	DM42_4201	annotation not available	annotation not available	0.452
DM42_6291	WL94_04240	DM42_6291	DM42_2585	annotation not available	annotation not available	0.419
DM42_6291	WL94_09205	DM42_6291	DM42_3960	annotation not available	annotation not available	0.588
DM42_6291	WL94_38520	DM42_6291	DM42_6018	annotation not available	annotation not available	0.658
DM42_6291	dgdR	DM42_6291	DM42_5758	annotation not available	annotation not available	0.450
DM42_6674	DM42_6291	DM42_6674	DM42_6291	annotation not available	annotation not available	0.458
DM42_6674	WL94_09205	DM42_6674	DM42_3960	annotation not available	annotation not available	0.602
WI67_06080	WL94_09205	DM42_469	DM42_3960	annotation not available	annotation not available	0.585
WI67_06180	WL94_09205	DM42_454	DM42_3960	annotation not available	annotation not available	0.594
WI67_21455	DM42_6291	DM42_4201	DM42_6291	annotation not available	annotation not available	0.452
WI67_21455	WL94_09205	DM42_4201	DM42_3960	annotation not available	annotation not available	0.639
WI67_21455	WL94_38520	DM42_4201	DM42_6018	annotation not available	annotation not available	0.547
WL94_04240	DM42_6291	DM42_2585	DM42_6291	annotation not available	annotation not available	0.419
WL94_04240	WL94_09205	DM42_2585	DM42_3960	annotation not available	annotation not available	0.600
WL94_05690	WL94_09205	DM42_6308	DM42_3960	annotation not available	annotation not available	0.604
WL94_09200	WL94_09205	DM42_3959	DM42_3960	annotation not available	annotation not available	0.741
WL94_09205	DM42_6291	DM42_3960	DM42_6291	annotation not available	annotation not available	0.588
WL94_09205	DM42_6674	DM42_3960	DM42_6674	annotation not available	annotation not available	0.602
WL94_09205	WI67_06080	DM42_3960	DM42_469	annotation not available	annotation not available	0.585

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