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STRINGSTRING
DM42_4048 protein (Burkholderia cepacia) - STRING interaction network
"DM42_4048" - PRTRC_E: PRTRC system E domain protein in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_4048PRTRC_E- PRTRC system E domain protein (181 aa)    
Predicted Functional Partners:
DM42_4050
PRTRC_F- PRTRC system F family protein (347 aa)
              0.837
DM42_4049
annotation not available (129 aa)
              0.837
DM42_4052
Conserved hypothetical protein (263 aa)
              0.837
DM42_4054
Conserved hypothetical protein (146 aa)
              0.837
DM42_4053
annotation not available (246 aa)
              0.837
DM42_4051
annotation not available (237 aa)
              0.837
DM42_4055
annotation not available (124 aa)
              0.818
DM42_4056
Conserved hypothetical protein (120 aa)
              0.416
DM42_4047
annotation not available (69 aa)
              0.405
DM42_4046
annotation not available (56 aa)
              0.405
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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