STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_4070annotation not available (196 aa)    
Predicted Functional Partners:
fdnG
Formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
 0.999
fdxH
Formate dehydrogenase iron-sulfur subunit; FDH-beta: formate dehydrogenase, beta subunit
 
 0.998
fdoI
formate-DH-gamm: formate dehydrogenase, gamma subunit
 
 0.997
fdhE
Formate dehydrogenase accessory protein fdhe; Necessary for formate dehydrogenase activity
 
 
 
 0.948
DM42_3916
annotation not available
 
 0.918
DM42_798
Fdh-alpha: formate dehydrogenase, alpha subunit
 
 0.917
selB
selB: selenocysteine-specific translation elongation factor
 
   
 0.916
selA
L-seryl-trna(ser) seleniumtransferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis
 
   
 0.914
hutG
hutG_amidohyd: N-formylglutamate deformylase
  
 
  0.902
oxdD
annotation not available
     
  0.900
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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