STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_4076annotation not available (372 aa)    
Predicted Functional Partners:
DM42_4079
annotation not available
  
     0.635
repA4
annotation not available
  
     0.518
DM42_1750
Hypothetical protein; Porin; OMP85_target: outer membrane insertion C-terminal signal domain protein
  
     0.517
DM42_2574
Hypothetical protein; Uncharacterized protein
  
     0.501
DM42_5271
Conserved hypothetical protein
  
     0.500
DM42_4760
annotation not available
  
     0.477
DM42_4075
Bacterial dna-binding family protein; Belongs to the bacterial histone-like protein family
       0.442
DM42_6318
annotation not available
  
     0.427
DM42_4081
annotation not available
 
   
 0.405
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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