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DM42_4098 protein (Burkholderia cepacia) - STRING interaction network
"DM42_4098" - annotation not available in Burkholderia cepacia
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_4098annotation not available (702 aa)    
Predicted Functional Partners:
trpF
annotation not available (233 aa)
         
  0.894
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (270 aa)
              0.893
DM42_1431
Conserved hypothetical protein (288 aa)
 
     
  0.805
DM42_7390
annotation not available (4558 aa)
 
     
  0.789
DM42_5248
Conserved hypothetical protein (471 aa)
 
          0.786
DM42_1433
Conserved hypothetical protein (307 aa)
 
          0.786
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine (397 aa)
              0.783
DM42_2604
Conserved hypothetical protein (251 aa)
   
          0.782
DM42_1806
Conserved hypothetical protein (105 aa)
   
          0.780
DM42_1169
Autotrans_barl- outer membrane autotransporter barrel domain protein (1767 aa)
 
     
  0.778
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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