STRINGSTRING
neo protein (Burkholderia cepacia) - STRING interaction network
"neo" - annotation not available in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
neoannotation not available (264 aa)    
Predicted Functional Partners:
DM42_5341
annotation not available (264 aa)
 
     
  0.743
tetR
annotation not available (210 aa)
   
     
  0.566
DM42_4159
RND_mfp- efflux transporter, RND family, MFP subunit (386 aa)
              0.484
gudD
Glucar-dehydr- glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family (450 aa)
     
   
  0.483
pgaC
pgaC_IcaA- poly-beta-1,6 N-acetyl-D-glucosamine synthase (423 aa)
           
  0.477
pgaA
PGA_TPR_OMP- poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA (877 aa)
           
  0.475
DM42_4161
annotation not available (476 aa)
              0.453
WL94_07250
2A0602- RND transporter, hydrophobe/amphiphile efflux-1 family protein (1047 aa)
              0.453
DM42_4544
Conserved hypothetical protein (430 aa)
   
          0.442
DM42_7295
annotation not available (221 aa)
   
     
  0.438
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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