Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

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protein homology

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Score

WL94_26660

Flavo, HI0933 family protein (406 aa)

Predicted Functional Partners:

tsaD

0.647

DM42_4172

0.607

cbiT

0.522

cobJ

0.437

WL94_29905

0.421

WI67_21610

0.409

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_4172	WI67_21610	DM42_4172	DM42_4171	S21p- ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family	annotation not available	0.564
DM42_4172	WL94_26660	DM42_4172	DM42_4173	S21p- ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family	Flavo, HI0933 family protein	0.607
DM42_4172	tsaD	DM42_4172	DM42_4174	S21p- ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family	tRNA N6-adenosine threonylcarbamoyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family	0.475
WI67_21610	DM42_4172	DM42_4171	DM42_4172	annotation not available	S21p- ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family	0.564
WI67_21610	WL94_26660	DM42_4171	DM42_4173	annotation not available	Flavo, HI0933 family protein	0.409
WI67_21610	tsaD	DM42_4171	DM42_4174	annotation not available	tRNA N6-adenosine threonylcarbamoyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family	0.545
WL94_26660	DM42_4172	DM42_4173	DM42_4172	Flavo, HI0933 family protein	S21p- ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family	0.607
WL94_26660	WI67_21610	DM42_4173	DM42_4171	Flavo, HI0933 family protein	annotation not available	0.409
WL94_26660	WL94_29905	DM42_4173	DM42_3442	Flavo, HI0933 family protein	annotation not available	0.421
WL94_26660	cbiT	DM42_4173	DM42_22	Flavo, HI0933 family protein	cbiT- precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit	0.522
WL94_26660	cobJ	DM42_4173	DM42_26	Flavo, HI0933 family protein	Cobalamin biosynthesis protein CbiG; cobJ_cbiH- precorrin-3B C17-methyltransferase	0.437
WL94_26660	tsaD	DM42_4173	DM42_4174	Flavo, HI0933 family protein	tRNA N6-adenosine threonylcarbamoyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family	0.647
WL94_29905	WL94_26660	DM42_3442	DM42_4173	annotation not available	Flavo, HI0933 family protein	0.421
cbiT	WL94_26660	DM42_22	DM42_4173	cbiT- precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit	Flavo, HI0933 family protein	0.522
cbiT	cobJ	DM42_22	DM42_26	cbiT- precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit	Cobalamin biosynthesis protein CbiG; cobJ_cbiH- precorrin-3B C17-methyltransferase	0.999
cobJ	WL94_26660	DM42_26	DM42_4173	Cobalamin biosynthesis protein CbiG; cobJ_cbiH- precorrin-3B C17-methyltransferase	Flavo, HI0933 family protein	0.437
cobJ	cbiT	DM42_26	DM42_22	Cobalamin biosynthesis protein CbiG; cobJ_cbiH- precorrin-3B C17-methyltransferase	cbiT- precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit	0.999
tsaD	DM42_4172	DM42_4174	DM42_4172	tRNA N6-adenosine threonylcarbamoyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family	S21p- ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family	0.475
tsaD	WI67_21610	DM42_4174	DM42_4171	tRNA N6-adenosine threonylcarbamoyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family	annotation not available	0.545
tsaD	WL94_26660	DM42_4174	DM42_4173	tRNA N6-adenosine threonylcarbamoyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family	Flavo, HI0933 family protein	0.647

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