STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_4190Marr family transcriptional regulator, organic hydroperoxide resistance regulator; MarR family transcriptional regulator; Iron dependent repressor, N-terminal DNA binding domain protein (150 aa)    
Predicted Functional Partners:
DM42_4191
Organic hydroperoxide resistance protein; Organ_hyd_perox: peroxiredoxin, Ohr subfamily protein
  
 0.863
DM42_6558
Organic hydroperoxide resistance protein; Organ_hyd_perox: peroxiredoxin, Ohr subfamily protein
  
 0.717
DM42_1731
annotation not available
  
   
 0.708
Peroxiredoxin
Peroxiredoxin; Organ_hyd_perox: peroxiredoxin, Ohr subfamily protein
  
 0.608
bsaA
Glutathione peroxidase family protein; Belongs to the glutathione peroxidase family
 
  
 0.556
DM42_5229
Organ_hyd_perox: peroxiredoxin, Ohr subfamily protein
  
 0.535
thrB
Homoserine kinase type ii; Belongs to the pseudomonas-type ThrB family
       0.492
DM42_4189
annotation not available
       0.492
DM42_4502
annotation not available
  
    0.433
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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