STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptpLow molecular weight protein-tyrosine-phosphatase ptp; Belongs to the low molecular weight phosphotyrosine protein phosphatase family (147 aa)    
Predicted Functional Partners:
DM42_4228
annotation not available
 
  
 0.981
DM42_4227
Eps_fam: capsular exopolysaccharide family domain protein
 
 
 0.950
DM42_2960
Belongs to the low molecular weight phosphotyrosine protein phosphatase family
  
  
 0.912
DM42_4463
annotation not available
  
  
  0.910
DM42_3757
annotation not available
 
  
 0.842
DM42_216
annotation not available
    
 0.829
DM42_4230
UDP-glucose 6-dehydrogenase; NDP-sugDHase: nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family
     
 0.785
DM42_3756
annotation not available
 
 
 0.780
DM42_1065
annotation not available
  
  
 0.727
DM42_4231
Putative colanic acid biosysnthesis udp-glucose lipid carrier transferase; wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase
 
  
 0.711
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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