Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DM42_427 | carA | DM42_427 | DM42_431 | Hypothetical protein; Uncharacterized protein | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family | 0.483 |
| DM42_427 | carB | DM42_427 | DM42_429 | Hypothetical protein; Uncharacterized protein | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family | 0.598 |
| DM42_427 | greA | DM42_427 | DM42_428 | Hypothetical protein; Uncharacterized protein | Transcription elongation factor grea domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides | 0.846 |
| carA | DM42_427 | DM42_431 | DM42_427 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family | Hypothetical protein; Uncharacterized protein | 0.483 |
| carA | carB | DM42_431 | DM42_429 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family | 0.999 |
| carA | greA | DM42_431 | DM42_428 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family | Transcription elongation factor grea domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides | 0.699 |
| carB | DM42_427 | DM42_429 | DM42_427 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family | Hypothetical protein; Uncharacterized protein | 0.598 |
| carB | carA | DM42_429 | DM42_431 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family | 0.999 |
| carB | greA | DM42_429 | DM42_428 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family | Transcription elongation factor grea domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides | 0.771 |
| carB | rpoB | DM42_429 | DM42_1481 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family | Dna-directed rna polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates | 0.472 |
| dksA | greA | DM42_1922 | DM42_428 | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters | Transcription elongation factor grea domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides | 0.862 |
| dksA | nusG | DM42_1922 | DM42_1486 | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters | Transcription termination/antitermination protein nusg; Participates in transcription elongation, termination and antitermination | 0.420 |
| dksA | rho | DM42_1922 | DM42_3271 | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters | Transcription termination factor rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template | 0.554 |
| dksA | rpoA | DM42_1922 | DM42_1447 | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters | Dna-directed rna polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates | 0.666 |
| dksA | rpoB | DM42_1922 | DM42_1481 | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters | Dna-directed rna polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates | 0.735 |
| dksA | rpoC | DM42_1922 | DM42_1480 | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters | Dna-directed rna polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates | 0.941 |
| dksA | rpoZ | DM42_1922 | DM42_836 | Rna polymerase-binding protein dksa; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters | Dna-directed rna polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits | 0.912 |
| greA | DM42_427 | DM42_428 | DM42_427 | Transcription elongation factor grea domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides | Hypothetical protein; Uncharacterized protein | 0.846 |
| greA | carA | DM42_428 | DM42_431 | Transcription elongation factor grea domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family | 0.699 |
| greA | carB | DM42_428 | DM42_429 | Transcription elongation factor grea domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family | 0.771 |
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