Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DM42_427 | carA | DM42_427 | DM42_431 | Hypothetical protein; Uncharacterized protein | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family | 0.483 |
| DM42_427 | carB | DM42_427 | DM42_429 | Hypothetical protein; Uncharacterized protein | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family | 0.598 |
| DM42_427 | greA | DM42_427 | DM42_428 | Hypothetical protein; Uncharacterized protein | Transcription elongation factor grea domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides | 0.846 |
| DM42_427 | leuE | DM42_427 | DM42_430 | Hypothetical protein; Uncharacterized protein | annotation not available | 0.444 |
| carA | DM42_427 | DM42_431 | DM42_427 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family | Hypothetical protein; Uncharacterized protein | 0.483 |
| carA | carB | DM42_431 | DM42_429 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family | 0.999 |
| carA | greA | DM42_431 | DM42_428 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family | Transcription elongation factor grea domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides | 0.699 |
| carA | leuE | DM42_431 | DM42_430 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family | annotation not available | 0.825 |
| carB | DM42_427 | DM42_429 | DM42_427 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family | Hypothetical protein; Uncharacterized protein | 0.598 |
| carB | carA | DM42_429 | DM42_431 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family | 0.999 |
| carB | greA | DM42_429 | DM42_428 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family | Transcription elongation factor grea domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides | 0.771 |
| carB | leuE | DM42_429 | DM42_430 | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family | annotation not available | 0.771 |
| greA | DM42_427 | DM42_428 | DM42_427 | Transcription elongation factor grea domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides | Hypothetical protein; Uncharacterized protein | 0.846 |
| greA | carA | DM42_428 | DM42_431 | Transcription elongation factor grea domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family | 0.699 |
| greA | carB | DM42_428 | DM42_429 | Transcription elongation factor grea domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family | 0.771 |
| greA | leuE | DM42_428 | DM42_430 | Transcription elongation factor grea domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides | annotation not available | 0.530 |
| leuE | DM42_427 | DM42_430 | DM42_427 | annotation not available | Hypothetical protein; Uncharacterized protein | 0.444 |
| leuE | carA | DM42_430 | DM42_431 | annotation not available | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family | 0.825 |
| leuE | carB | DM42_430 | DM42_429 | annotation not available | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family | 0.771 |
| leuE | greA | DM42_430 | DM42_428 | annotation not available | Transcription elongation factor grea domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides | 0.530 |
